Publications

Details of the group's publications.

65. Dual-stimuli responsive ionophore for OFF–ON–OFF transmembrane calcium ion transport and inter-vesicle signalling,
G. Kaur, K. M. Bąk, D. C. Edwards, S. L. Cockroft, M. H. Horrocks, M. J. Langton*, Chem. Sci. (2026), DOI: 10.1039/d6sc02506d
 

Dual responsive vesicles

64. Fluorescence characterization of extracellular vesicles using single-molecule confocal microscopy,
T. Zhao, N. Pelegrina-Hidalgo, D. C. Edwards, K. M. Bąk, U. Karmakar, A. J. Fernando, M. Vendrell, A. G. Rossi, S. L. Cockroft, T. Kunath, R. S. Saleeb, M. H. Horrocks*, Small Methods (2025), 9, e00907. Citations
 

Extracellular vesicles

63. Unveiling repulsion in intramolecular H-bonded systems,
I. V. Smolyar, S. L. Cockroft*, J. Am. Chem. Soc., 147, 12381–12385 (2025) Citations

 

Unveiling Repulsion in Intramolecular H-bonded Systems

62. A single-molecule liposome assay for membrane permeabilisation,
K. M. Bąk, D. C. Edwards, D. George, B. Singh, R. Ferguson, T. Zhao, K. Piché, A. Louwrier, S. L. Cockroft,* M. H. Horrocks*, Angew. Chem. Int. Ed., 64, e202503678 (2025) Citations

-Featured on the back cover of Angew. Chem. Int. Ed.
 

Back cover

61. Solvent attenuation of London dispersion in polycyclic aromatic stacking,
A. Elmi, K. M. Bąk, S. L. Cockroft*, Angew. Chem. Int. Ed., 63, e202412056 (2024) Citations

-Featured as a Hot Paper in Angew. Chem. Int. Ed.
 

Solvent attenuation of London dispersion in polycyclic aromatic stacking

60. An active machine learning discovery platform for membrane-disrupting and pore-forming peptides,
A. van Teijlingen, D. C. Edwards, L. Hu, A. Lilienkampf, S. L. Cockroft, T. Tuttle*, Phys. Chem. Chem. Phys., 26, 17745–17752 (2024) Citations
 

An active machine learning discovery platform for membrane-disrupting and pore-forming peptides,

59. Context-dependent significance of London dispersion,
L. A. Gravillier, S. L. Cockroft*. Acc. Chem. Res., 23, 3535–3544 (2023) Citations

-Featured in Acc. Chem. Res. 'Special Issue - Dispersion Interactions in Chemistry'
 

Context-dependent significance of London dispersion

58. Experimental quantification of halogen∙∙∙arene van der Waals contacts,
A. M. L. West, N. Dominelli-Whiteley, I. V. Smolyar, G. S. Nichol, S. L. Cockroft*. Angew. Chem. Int. Ed., 62, e202309682 (2023) Citations

-Featured in Chemistry Views, 'Molecular balances used to measure halogen∙∙∙arene interactions'
 

Experimental quantification of halogen∙∙∙arene van der Waals contacts

57. Dissecting solvent effects on hydrogen bonding,
N. Y. Meredith, S. Borsley, I. V. Smolyar, G. S. Nichol, C. M. Baker, K. B. Ling, S. L. Cockroft*. Angew. Chem. Int. Ed., 61, e202206604 (2022) Citations

-Featured in Nature Reviews Chemistry, 'Weighing up solvent effects', and as a Hot Paper in Angew. Chem.
 

Dissecting solvent effects on hydrogen bonding

56. Functionalised nanopores: Chemical and biological modifications
D. F. Cairns-Gibson, S. L. Cockroft*. Chem. Sci., 13, 13691882 (2022). Citations
 

Functionalised nanopores: Chemical and biological modifications

55. Quantifying interactions and solvent effects using molecular balances and model complexes
A. Elmi, S. L. Cockroft*. Acc. Chem. Res., 54, 92103 (2021). Citations
 

Quantifying interactions and solvent effects using molecular balances and model complexes

54. Reversible reductive elimination in Al(II) dihydrides
R. L. Falconer, G. S. Nichol, I. V. Smolyar, S. L. Cockroft, M. J. Cowley*. Angew. Chem. Int. Ed., 60, 20472052 (2021). Citations
 

Reversible reductive elimination in Al(II) dihydrides

53. Strand displacement in DNA-based nanodevices and logic
A. Bader, S. L. Cockroft*. Book chapter in 'DNA- and RNA-Based Computing Systems' (E. Katz, Ed.), Wiley-VCH (2021). Citations
 

Strand displacement in DNA-based nanodevices and logic

52. Reversible stimuli-responsive chromism of a cyclometallated platinum(II) complex
Q. Zheng, S. Borsley, T. Tu, S. L. Cockroft*. Chem. Commun., 56, 1470514708 (2020). Citations
 

Reversible stimuli-responsive chromism of a cyclometallated platinum(II) complex

51. Transmembrane ion channels formed by a star of David [2]catenane and a molecular pentafoil knot
D. P. August, S. Borsley, S. L. Cockroft, F. della Sala, D. A. Leigh,* S. J. Webb. J. Am. Chem. Soc., 142, 1885918865 (2020). Citations
 

Transmembrane ion channels formed by a star of David [2]catenane and a molecular pentafoil knot

50. Quantifying through-space substituent effects
R. J. Burns, I. K. Mati, K. B. Muchowska, C. Adam, S. L. Cockroft*. Angew. Chem. Int. Ed., 59, 1671716724 (2020). Citations 

-Featured in: Nature Reviews Chemistry and as a 
Hot Paper in Angew. Chem. -Also see commentary in Chemistry World
 

Quantifying through-space substituent effects

49. Switchable foldamer ion channels with antibacterial activity
A. D. Peters, S. Borsley, F. della Sala, D. F. Cairns-Gibson, M. Leonidou, J. Clayden, George F. S. Whitehead, I. Vitorica-Yrzebal, E. Takano, J. Burthem, S. L. Cockroft, S. Webb*. Chem. Sci., 11, 70237030 (2020). Citations

Switchable foldamer ion channels with antibacterial activity

48. Reconciling electrostatic and n→π* orbital contributions in carbonyl interactions
K. B. Muchowska, D. J. Pascoe, S. Borsley, I. V. Smolyar, I. K. Mati, C. Adam, G. S. Nichol, K. B. Ling, S. L. Cockroft*. Angew. Chem. Int. Ed., 59, 1460214608 (2020). Citations 

-Featured as a Hot Paper in Angew. Chem.

Reconciling electrostatic and n→π* orbital contributions in carbonyl interactions

47. Conformational enhancement of fidelity in toehold-sequestered DNA nanodevices
A. Bader, S. L. Cockroft*. Chem. Commun., 56, 51355138 (2020). Citations
 

Conformational enhancement of fidelity in toehold-sequestered DNA nanodevices

46. The importance of 1,5-oxygen-chalcogen interactions in enantioselective isochalcogenourea catalysis
C. M. Young, A. Elmi, D. J. Pascoe, R. K. Morris, C. McLaughlin, A. M. Woods, A. B. Frost, A. de la Houpliere, K. B. Ling, T. K. Smith, A. M. Z. Slawin, P. H. Willoughby*, S. L. Cockroft*, A. D. Smith*. Angew. Chem. Int. Ed., 59, 37053710 (2020). Citations
 

The importance of 1,5-oxygen-chalcogen interactions in enantioselective isochalcogenourea catalysis

45. The energetic significance of metallophilic interactions
Q. Zheng, S. Borsley, G. S. Nichol, F. Duarte, S. L. Cockroft*. Angew. Chem. Int. Ed., 58, 1261712623 (2019). Citations 

-Featured as a Hot Paper in Angew. Chem.

The energetic significance of metallophilic interactions

44. Synthetically diversified protein nanopores: Resolving click reaction mechanisms
M. M. Haugland, S. Borsley, D. F. Cairns-Gibson, A. Elmi, S. L. Cockroft*. ACS Nano, 13, 41014110 (2019). Citations
 

Synthetically diversified protein nanopores: Resolving click reaction mechanisms

43. Electrostatic forces in field-perturbed equilibria: nanopore analysis of cage complexes
S. Borsley, M. M. Haugland, S. Oldknow, J. A. Cooper, M. J. Burke, A. Scott, W. Grantham, J. Vallejo, E. K. Brechin, P. J. Lusby,* S. L. Cockroft*. Chem (Cell Press), 5, 12751292 (2019). Citations 

- Featured as a Preview in Chem

Electrostatic forces in field-perturbed equilibria: nanopore analysis of cage complexes

42. Simultaneous G-quadruplex DNA logic
A. Bader, S. L. Cockroft*. Chem. Eur. J., 24, 48204824 (2018). Citations

 

Simultaneous G-quadruplex DNA logic

41. Nanopore detection of single-molecule binding within a metallosupramolecular cage
S. Borsley, J. A. Cooper, P. J. Lusby, S. L. Cockroft*. Chem. Eur. J., 24, 45424546 (2018). Citations

 

Nanopore detection of single-molecule binding within a metallosupramolecular cage

40. An RNA-dependent mechanism for transient expression of bacterial translocation filaments
D. Wang, S. P. McAteer, A. B. Wawszczyk, C. D. Russell, A. Tahoun, A. Elmi, S. L. Cockroft, D. Tollervey, S. Granneman, J. J. Tree*, D. L. Gally*. Nucleic Acids Res., 46, 33663381 (2018). Citations
 

An RNA-dependent mechanism for transient expression of bacterial translocation filaments

39. In situ synthetic functionalization of a transmembrane protein nanopore
S. Borsley, S. L. Cockroft*. ACS Nano, 12, 786794 (2018). Citations
 

In situ synthetic functionalization of a transmembrane protein nanopore

38. The role of terminal functionality in the membrane and antibacterial activity of peptaibol-mimetic Aib foldamers
C. Adam, A. D. Peters, M. G. Lizio, G. F. S. Whitehead, J. A. Cooper, S. L. Cockroft, J. Clayden*, S. J. Webb*. Chem. Eur. J., 24, 22492256 (2018). Citations 

-Featured as a Hot Paper in Chem. Eur. J.
 

The role of terminal functionality in the membrane and antibacterial activity of peptaibol-mimetic Aib foldamers

37. The origin of chalcogen-bonding interactions
D. J. Pascoe, K. B. Ling, S. L. Cockroft*. J. Am. Chem. Soc., 139, 1516015167 (2017). Citations
 
 

The origin of chalcogen-bonding interactions

36. Screening solvent effects in anion recognition
S. L. Cockroft*. Chem (Cell Press), 3, 383384 (2017). Citations


 

Screening solvent effects in anion recognition

35. High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast
E. Burlacu, F. Lackmann, L.-C. Aguilar, S. Belikov, R. van Nues, C. Trahan, R. D. Hector, N. Dominelli-Whiteley, S. L. Cockroft, L. Wieslander, M, Oeffinger, S. Granneman*. Nature Commun., 8, Article Number 714 (2017). Citations

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

34. Structural evidence for the covalent modification of FabH by 4,5-dichloro-1,2-dithiol-3-one (HR45)
A. G. Ekström, V. Kelly, J. Marles-Wright, S. L. Cockroft, D. J. Campopiano*. Org. Biomol. Chem. 15, 63106313 (2017). Citations

Structural evidence for the covalent modification of FabH by 4,5-dichloro-1,2-dithiol-3-one (HR45)

33. Defocused imaging of UV-driven surface-bound molecular motors
B. Krajnik, J. Chen, M. A. Watson, S. L. Cockroft, B. L. Feringa*, J. C. Hofkens*. J. Am. Chem. Soc., 139 (21), 7156–7159 (2017). Citations
 
 

Defocused imaging of UV-driven surface-bound molecular motors

32. Strong short-range cooperativity in H-bond chains
N. Dominelli-Whiteley, J. J. Brown, K. B. Muchowska, I. K. Mati, C. Adam, T. A. Hubbard, A. Elmi, A. J. Brown, I. A. W. Bell, S. L. Cockroft*. Angew. Chem. Int. Ed., 56 (26), 7658–7662 (2017). Citations
 

Strong short-range cooperativity in H-bond chains

31. Discrimination of supramolecular chirality using a protein nanopore
J. A. Cooper, S. Borsley, P. J. Lusby, S. L. Cockroft*. Chem. Sci. 8, 5005–5009 (2017). Citations 

-Featured in the themed collection International Symposium on Macrocyclic & Supramolecular Chemistry (ISMSC) in conjunction with ISACS
 

Discrimination of supramolecular chirality using a protein nanopore

30. Transmembrane signalling: Membrane messengers
S. L. Cockroft*. Nature Chem., 9 (5), 406–407 (2017). Citations
 
 

Transmembrane signalling: Membrane messengers

29. The limit of intramolecular H-bonding
T. A. Hubbard, A. J. Brown, I. A. W. Bell, S. L. Cockroft*. J. Am. Chem. Soc., 138 (46), 15114–15117 (2016). Citations 

-Featured in top ten "most read" articles in J. Am. Chem. Soc. Nov '16 to Jan '17
 

The limit of intramolecular H-bonding

28. Man-made molecular machines: membrane bound
M. A. Watson, S. L. Cockroft*. Chem. Soc. Rev., 45, 6118–6129 (2016). Citations 

-Featured as a Hot Article in ChemSocRev 
-Featured in: ChemSocRev Emerging Investigators 2016 themed collection

Man-made molecular machines: membrane bound

27. Length-dependent formation of transmembrane pores by 310 helical aminoisobutyric acid foldamers
J. E. Jones, V. Diemer, C. Adam, J. Raftery, R. E. Ruscoe, J. Sengel, M. I. Wallace, A. Bader, S. L. Cockroft, J. Clayden*, S. J. Webb*. J. Am. Chem. Soc., 138 (2), 688–695 (2016). Citations
 

Length-dependent formation of transmembrane pores by 310 helical aminoisobutyric acid foldamers

26. An autonomously reciprocating transmembrane nanoactuator
M. A. Watson, S. L. Cockroft*. Angew. Chem. Int. Ed., 55 (4), 1345–1349 (2016). Citations 

-Featured as a Hot Paper in Angew. Chem. Int. Ed.

An autonomously reciprocating transmembrane nanoactuator

25. Can dispersion forces govern aromatic stacking in an organic solvent? 
L. Yang, J. B. Brazier, T. A. Hubbard, D. M. Rogers, S. L. Cockroft*. Angew. Chem. Int. Ed., 55 (3), 912–916 (2016). Citations 

-Highlighted in Chemistry Views

Can dispersion forces govern aromatic stacking in an organic solvent?

24. Quantifying solvophobic effects in non-polar cohesive interactions
L. Yang, C. Adam, S. L. Cockroft*. J. Am. Chem. Soc., 137 (32), 10084–10087 (2015). Citations
 

Quantifying solvophobic effects in non-polar cohesive interactions

23. DNA modulates solvent isotope effects in a nanopore
M. A. Watson, S. L. Cockroft*. Chem. Commun., 51, 12243–12246 (2015). Citations

 

DNA modulates solvent isotope effects in a nanopore

22. Partitioning solvophobic and dispersion forces in alkyl and perfluoroalkyl cohesion
C. Adam, L. Yang, S. L. Cockroft*. Angew. Chem. Int. Ed., 54 (4), 1164–1167 (2015). Citations
 

Partitioning solvophobic and dispersion forces in alkyl and perfluoroalkyl cohesion

21. Can non-polar hydrogen atoms accept hydrogen bonds?
L. Yang, T. A. Hubbard,S. L. Cockroft*. Chem. Commun., 50 (40), 5212–5214 (2014). Citations 

-Featured in: ChemComm Emerging Investigators 2014 themed collection

Can non-polar hydrogen atoms accept hydrogen bonds?

19. How much do van der Waals dispersion forces contribute to molecular recognition in solution? 
L. Yang, C. Adam, G. S. Nichol, S. L. Cockroft*. Nature Chem., 5 (12), 1006–1010 (2013). Citations 

-Featured in: Nature Chem. News & Views | Chemistry World | C&EN | In The Pipeline (Archived) | Chemisch2Weekblad

How much do van der Waals dispersion forces contribute to molecular recognition in solution?

18. Seeing through solvent effects using molecular balances
I. K. Mati, C. Adam, S. L. Cockroft*. Chem. Sci., 4, 3965–3972 (2013). Citations

 

Seeing through solvent effects using molecular balances

17. Electrostatic modulation of aromatic rings via explicit solvation of substituents
K. B. Muchowska, C. Adam, I. K. Mati, S. L. Cockroft*. J. Am. Chem. Soc., 135, 9976–9979 (2013). Citations
 

Electrostatic modulation of aromatic rings via explicit solvation of substituents

15. Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures
C. Naughton, N. Avlonitis, S. Corless, J. G. Prendergast, I. K. Mati, P. P. Eijk, S. L. Cockroft, M. Bradley, B. Ylstra, N. Gilbert*. Nature Struct. Mol. Biol., 20, 387–395 (2013). Citations 

-Featured in: Nature Struct. Mol. Biol. News & Views

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

14. Palladium(II)-mediated assembly of biotinylated ion channels
C. P. Wilson, C. Boglio, L. Ma, S. L. Cockroft, S. J. Webb*. Chem. Eur. J., 17, 3465–73 (2011). Citations

 

Palladium(II)-mediated assembly of biotinylated ion channels

13. Real-time monitoring of DNA polymerase function and stepwise single-nucleotide DNA strand translocation through a protein nanopore
J. Chu, M González-López, S. L. Cockroft, M. Amorin, M. R. Ghadiri*. Angew. Chem. Int. Ed., 49, 10106–10109 (2010). Citations 

-Featured in: Chemistry World | Nano Today

Real-time monitoring of DNA polymerase function and stepwise single-nucleotide DNA strand translocation through a protein nanopore

12. Molecular balances for quantifying non-covalent interactions
I. K. Mati, S. L. Cockroft*. Chem. Soc. Rev., 39, 4195–4205 (2010). Citations

 

Molecular balances for quantifying non-covalent interactions

11. Biological nanopores for single-molecule biophysics
L. Ma, S. L. Cockroft*. ChemBioChem, 11, 25–34 (2010). Citations
 
 

Biological nanopores for single-molecule biophysics

10. Desolvation and substituent effects in edge-to-face aromatic interactions
S. L. Cockroft*, C. A. Hunter*. Chem. Commun., 3961–3963 (2009). Citations
 

Desolvation and substituent effects in edge-to-face aromatic interactions

9. A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution
S. L. Cockroft, J. Chu, M. Amorin, M. R. Ghadiri*. J. Am. Chem. Soc., 130, 818–820 (2008). Citations 

-Featured in: Nature | Nature Nanotechnology | ACS Chemical Biology

A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution

8. Modular multi-level circuits from immobilized DNA-based logic gates
B. M. Frezza, S. L. Cockroft, M. R. Ghadiri*. J. Am. Chem. Soc., 129, 14875-14879 (2007). Citations 

-Featured in: Nature

Modular multi-level circuits from immobilized DNA-based logic gates

7. Substituent effects on aromatic stacking interactions
S. L. Cockroft, J. Perkins, C. Zonta, H. Adams, S. E. Spey, C. M. R. Low, J. G. Vinter, K. R. Lawson, C. J. Urch, C. A. Hunter*. Org. Biomol. Chem., 5, 1062–1080 (2007). Citations
 

Substituent effects on aromatic stacking interactions

6. Chemical double-mutant cycles: Dissecting non-covalent interactions
S. L. Cockroft, C. A. Hunter*. Chem. Soc. Rev., 36, 172–188 (2007). Citations 

-Featured in: Supramolecular Chemistry Collection

Chemical double-mutant cycles: Dissecting non-covalent interactions

5. Desolvation tips the balance: Solvent effects on aromatic interactions
S. L. Cockroft, C. A. Hunter*. Chem. Commun., 36, 3806–3808 (2006). Citations

Desolvation tips the balance: Solvent effects on aromatic interactions

4. Electrostatic control of aromatic stacking interactions
S. L. Cockroft, C. A. Hunter*, K. R. Lawson, J. Perkins, C. J. Urch. J. Am. Chem. Soc., 127, 8594–8595 (2005). Citations
 

Electrostatic control of aromatic stacking interactions

3. Experimental measurement of noncovalent interactions between halogens and aromatic rings
H. Adams, S. L. Cockroft, C. Guardigli, C. A. Hunter*, K. R. Lawson, J. Perkins, S. E. Spey, C. J. Urch, R. Ford. ChemBioChem, 5, 657–665 (2004). Citations

Experimental measurement of noncovalent interactions between halogens and aromatic rings

2. A 1H NMR study of crystal nucleation in solution
A. Spitaleri, C. A. Hunter*, J. F. McCabe, M. J. Packer, S. L. Cockroft. CrystEngComm, 6, 489–493 (2004). Citations
 

A 1H NMR study of crystal nucleation in solution

Other Published Contributions

9. Commentary: Feeling the effects
S. G. Davey*, Nature Reviews Chemistry, (2020).

Commentary: Feeling the effects

6. Commentary: Nanomachines can bore cancer cells to death
J. Urquart*, Chemistry World, (2017).

Commentary: Nanomachines can bore cancer cells to death

5. Book review: Non-Covalent Interactions in the Synthesis and Design of New Compounds
S. L. Cockroft*, Appl. Organometal. Chem., DOI: 10.1002/aoc.3872 (2017).

Book review: Non-Covalent Interactions in the Synthesis and Design of New Compounds

4. Commentary: New type of hydrogen bond discovered
D. Bradley*, Chemistry World, (2016).

Commentary: New type of hydrogen bond discovered

3. Commentary: The silvery life of pi,  
D. Bradley*, Chemistry Views, DOI: 10.1002/chemv.201500052 (2015).

Commentary: The silvery life of pi

2. Commentary: An open and shut case for palladium
L. Howes*, Chem. Biol. (RSC) 3(9) B66 (2008).

Commentary: An open and shut case for palladium

1. Highlights from the 43rd EUCHEM Conference on Stereochemistry, Bürgenstock, Switzerland, April 2008
S. L. Cockroft*, D. M. Lindsay*, Chem. Commun., 6441–6445 (2008).

Highlights from the 43rd EUCHEM Conference on Stereochemistry, Bürgenstock, Switzerland, April 2008